Hamzah Mohammed
Background: Status epilepticus (SE) is a neurological emergency associated with high morbidity and mortality, yet the early molecular changes accompanying sustained seizure activity remain incompletely understood. Heterogeneity between gene expression studies of animal SE models warrants a robust comparison to define the transcriptomic profile of SE across platforms, species, and experimental models.
Methods: We performed a meta-analysis of published gene expression studies of animal SE models encompassing the first 72 hours following SE onset. Twelve studies, comprising 37 transcriptomic datasets, were included, spanning species (mouse, rat) and experimental model (kainic acid, pilocarpine, self-sustaining SE). Pre-defined time windows (0-12, 12-24, 24-72 hours) were used to improve temporal resolution. Datasets were harmonised, mapped to human orthologues and analysed using multilevel linear mixed-effects models.
Results: Across all datasets, 444,693 animal gene entries mapped to human orthologs, yielding 17,215 unique human genes. Global analysis across time windows and SE models identified 118 differentially expressed genes (112 upregulated and 6 downregulated). Temporal analysis demonstrated largely distinct transcriptional profiles across time windows, with 83-87% of DEGs specific to their respective window. Four genes (FOS, TUBB6, TIMP1, HSPB1) were persistently upregulated across the first 24 hours following onset. Model-stratified analysis revealed distinct transcriptomic profiles across SE models. Pathway enrichment analysis identified early enrichment of inflammatory signalling pathways, including interleukin-17 (IL-17) signalling.
Conclusions: We provide a comprehensive molecular overview of early SE and show it be characterised by a highly dynamic, time-dependent transcriptomic response, with a small core of conserved dysregulated genes and prominent activation of pro-inflammatory cascades.